androctonus crassicaudasales compensation surveys
The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. Bethesda, MD 20894, Web Policies Syst. inappropriateness of morphological characteristics for the detection of species and subspecies, the result of nuclear and mitochondrial markers was used in solving these challenges ( Gantenbein and Largiadr, 2002 Mol. The housekeeping ncRNAs also were removed. climatic conditions. An area under the receiver operating characteristic (AUC) curve visualized in Fig. The transcripts scored with a probability less than 0.4 were considered noncoding-RNA candidates. Getting stung by black scorpion Androctonus crassicauda: a - PubMed Toxin {"type":"entrez-nucleotide","attrs":{"text":"KU705366","term_id":"992287596","term_text":"KU705366"}}, {"type":"entrez-nucleotide","attrs":{"text":"KT972133","term_id":"992287553","term_text":"KT972133"}}, {"type":"entrez-nucleotide","attrs":{"text":"KT972133.1","term_id":"992287553","term_text":"KT972133.1"}}, {"type":"entrez-nucleotide","attrs":{"text":"KU705366.1","term_id":"992287596","term_text":"KU705366.1"}}. Androctonus crassicauda sting and its clinical study in Iran Haas, B. J. et al. Furthermore, all sequence data were closely related to the outgroup (95%). CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. found in the fractures of stones and bricks, sandy areas, rocky deserts, semideserts, and inside houses ( Navidpour, 2015 In summary, scorpion-specific annotation consists of three steps: (1) Downloading the specific sequences of scorpion, tick, spider (https://www.uniprot.org/) and, all manually reviewed venom proteins and toxins from the venomous animals (https://www.uniprot.org/program/Toxins) in fasta format. Fatemeh Salabi. Phylogenomics facilitates stable scorpion systematics: Reassessing the relationships of Vaejovidae and a new higher-level classification of Scorpiones (Arachnida), Sousa P, Arnedo MA, Harris DJ. In W. Bttiker, F. Krupp, I. Nader & W. Schneider (eds. This page was last edited on 17 October 2022, at 16:59. ). (A) The fraction of scorpion dataset classified as protein-coding transcripts. Fernandes, J. C., Acua, S. M., Aoki, J. I., Floeter-Winter, L. M. & Muxel, S. M. Long non-coding RNAs in the regulation of gene expression: Physiology and disease. 12, 323 (2011). Li, B. and partly in temperate habitats ( Fet and Braunwalder, 2000 While, CPC2, PLEK and CNIT were applied on the scorpion dataset, the accuracy values are 0.53, 0.49, and 0.52, respectively (Table 3). For data collected from the database, CPC and CNIT showed good performance as compared with PLEK (Table 2). If genetic variation exists, further studies should be carried out on scorpion toxin compounds to develop the efficiency of scorpion envenomation. Toxicon 95, 5261 (2015). Roughly forty-three thousand known lncRNAs of the fruit fly have been registered in the NONCODEv4 database but have yet to be identified in other insects. The CP threshold used for the scorpion dataset was 0.4. 123, 1118 (2013). Fang, Y. This scorpion can make venom. [11] To simulate the desert environment, the enclosure used to keep the scorpion in must be kept at a temperature of between 26 and 30 degrees Celsius (7986F)[citation needed]. Proced. Moreover, Comput. The ML tree revealed Despite the important role of lncRNAs in biological processes, a limited number of studies focus on non-model animal lncRNAs. Finally, we generate a ROC curve to visualize the classification performances of four approaches further (Fig. The amplification of COXI and 12sRNA Rafeeazadeh S. Report of scorpion sting In Iran during 2009. Department of Venomous Animals, Razi Vaccine and Serum Research Institute, Agricultural Research, Education, and Extension Organization, Karaj, Iran. In addition, RNACentral and NONCOD databases were used to predict the known lncRNAs. The obtained results indicated that the ECF pipeline is suited for de novo assembled data sets from scorpion species. ADS Google Scholar. ; Rafeeazadeh, 2009 The intraspecific genetic distance of A. crassicuda isolated from Khuzestan was highly close (0.001), The version described in this paper is the first version, KEPY01000000. volume11, Articlenumber:4720 (2021) To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. Androctonus crassicauda venom has an i.v. Koch, 1839) inferred from COI sequences (Scorpiones: Buthidae). Furthermore, we compared ECF pipeline's performance with that of PLEK, CNIT, and CPC using a test dataset, which includes 3976 lncRNAs and 30,588 mRNAs of the fruit fly. 7A). At least 44 different sub-fractions were resolved and collected for finger print mass analysis using an electrospray mass spectrometer. Zhu, Q.-H. & Wang, M.-B. The study of the morphology and phylogeny of ). Both of these techniques make it possible to identify more accurate lncRNAs (Fig. The details of the In this study, we used a stringent step-by-step filtering pipeline and machine learning-based tools to identify the specific Androctonus crassicauda lncRNAs and analyze the features of predicted scorpion lncRNAs. In: Symbolae physicae seu icones et descriptiones animalium evertebratorum sepositis insectis quae ex itinere per Africam borealem et Asiam occidentalem. Nucleic Acids Res. residential buildings under the rocks, under the crust of dead trees, and from the nests of other animals. eCollection 2022 Mar. fingers, and their chelae were slender with long fingers. Fifty-one non-fatal and one fatal cases of scorpion sting were presented. clustered together, and their relationship was in accordance with the following equation: (A. australis + A. amorexi) + A. crassicauda Traffic 10, 11991208 (2009). In this study, molecular variation in mtDNA cytochrome oxidase subunit I (COI) gene within seven populations of A. crassicauda from four main ecological regions of Saudi Arabia was investigated. of genus, species, and subspecies ( Hjelle, 1990 Quiat, D. & Olson, E. N. MicroRNAs in cardiovascular disease: From pathogenesis to prevention and treatment. In purpose of discarding any known protein domain, we employed species-specific annotation. of scorpions and determination of their relationships are based on the analysis of morphological characteristics and morphometric studies ( Fet and Braunwalder, 2000 On the other hand, metasoma was longer and wider in males than Ca_L/W: carapace length to width; Met-I_L/W: metasomal segment I length to width; Met-I_L/H: metasomal segment Androctonus crassicauda from Southeastern Anatolia [Photographed by Taxonomy browser (Androctonus crassicauda) - National Center for If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. Acad. J Arthropod Borne Dis. Ramy | Herpetology & Wildlife on Instagram: "Gravid female Arabian Systematic identification and characterization of long non-coding RNAs in the silkworm, Bombyx mor. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. The Arabian fat-tailed scorpion or black Turkish fat-tailed scorpion ( Androctonus crassicauda) is a species of scorpion. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. LncFinder: An integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property. Investigation of the relationship of species by means of a molecular The venom of this scorpion is used for the production of polyvalent antivenom through hyperimmunizing healthy horses by the Razi Vaccine Genomic DNA was extracted using an extraction kit (Sina PureTM DNA kit Tehran, Iran) according Androctonus crassicauda is the second most frequent cause of scorpion sting in southwest Iran. In the present study, the samples were Androctonus crassicauda - Wikipedia Beraldo Neto E, Freitas LA, Pimenta DC, Lebrun I, Nencioni ALA. Toxins (Basel). The blast results indicated that the majority of these lncRNAs sequences (12,642) have no identifiable orthologs even in closely related species and those considered as novel lncRNAs. All authors have reads and approved the manuscript. 104, 1942819433 (2007). Accessibility Cao, J. Androctonus crassicauda Taxonomy ID: 122909 (for references in articles please use NCBI:txid122909) current name. Several preserved specimens were measured for each species; subsequently, average measurements were calculated. The regulatory ncRNA also can be grouped as small non-coding RNAs and long non-coding RNA26,27. distance among the populations. We hereby declare all ethical standards have been respected in preparation of the submitted article. official website and that any information you provide is encrypted Inclusion in an NLM database does not imply endorsement of, or agreement with, ), Fauna of Arabia (pp. Finally, all samples were sequenced with 150bp paired-end reads at Macrogen Co (Macrogen, Seoul, South Korea) using Illumina HiSeq 2000 sequencing platform (Illumina, San Diego, CA, USA). The trend of lower protein-coding potential, lower GC content, shorter transcript length, and less number of isoform per gene in lncRNAs sequence over protein-coding transcripts are outstanding features of A. crassicauda lncRNAs transcripts that mean these sequences contain lower stably base-paired structures and therefore, it is more possible to interact with other cellular factors21,37,45,46,47. Department of Venomous Animals and Anti-Venom Production, Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Ahvaz, Iran, Department of Venomous Animals and Anti-Venom Production, Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran, Aquaculture Research Center-South of Iran, Iranian Fisheries Science Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Ahvaz, Iran, You can also search for this author in Investig. Today, the molecular study and nucleotide sequences of these genes are used to characterize the Dinger, M.E., et al. After filtering, cleaning and trimming of the raw reads generated from Illumina sequencing platform, clean reads were de novo assembled into contigs using Trinity software (v. 2.0.3)18 with optimized parameters. Two pregnant victims were treated with antivenom with no bad consequences on mothers or foetuses. Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species. CAS We finally compared ECF pipeline with lncRNA prediction tools using data sets of scorpion and fruit fly. Besides, this tool searches the sequences against the protein database and distinguishes protein-coding from non-coding RNAs. Androctonus crassicuda were nightly collected from Khuzestan region based on their dispersion and diversity Article If the scorpion stings a human with its venom, it cause swelling or problems with the heart and lungs or death. The phylogenetic study of other species of Androctonus The morphological measurements were conducted using digital calipers. The most common parameters for species identification included total body, metasoma, carapace, pedipalp, and telson length, as well as pectinal tooth Figure5 showed that using lncRNAs prediction tools in species without closely related organisms to build ncRNA/mRNA distinguishing model increases the false positive rate compared to database derived dataset. ex Officina Academica, Venditur a Mittlero, Berlin, "Arabian fat-tailed scorpion videos, photos and facts - Androctonus crassicauda | Arkive", "Dictionary of Scientific Scorpion Names", "Antidotes In Depth, Jeffrey N. Bernstein", https://en.wikipedia.org/w/index.php?title=Fattail_scorpion&oldid=1161294447, Taxa named by Christian Gottfried Ehrenberg, Short description is different from Wikidata, Vague or ambiguous geographic scope from May 2021, Articles with unsourced statements from September 2016, Creative Commons Attribution-ShareAlike License 4.0, This page was last edited on 21 June 2023, at 20:30.
